ptm (version 0.2.2)

pdb.res: Check Whether a Given Residue is Found in the PDB

Description

Checks whether or not a given residue is resolved in the PDB structure.

Usage

pdb.res(at, up, pdb, chain)

Arguments

at

the position in the primary structure of the residue (according to the UniProt sequence).

up

the UniProt ID.

pdb

the 4-letter PDB identifier.

chain

letter identifying the chain.

Value

The functions returns TRUE if the residue is found in the PDB sequence (and gives the position in that sequence). If the residue of interest is not found in the PDB the function returns FALSE.

Details

This function checks if a given residue in the Uniprot sequence is found in the PDB.

See Also

pdb.pep()

Examples

# NOT RUN {
pdb.res(at = 361, up = 'P48163', pdb = '2aw5', chain = 'A')
# }