ptm (version 0.2.2)

pdb.select: Select the PDB with the Optimal Coverage to the UniProt Sequence

Description

Select the PDB and chain with the optimal coverage to a given UniProt sequence.

Usage

pdb.select(up_id, threshold = 0.9)

Arguments

up_id

the UniProt ID.

threshold

coverage value that when reached the search is halted.

Value

A list of two elements: (i) the PDB ID and (ii) the chain. The coverage with the UniProt sequence is given as an attribute.

See Also

pdb.quaternary(), pdb.chain(), pdb.res(), pdb.pep(), uniprot2pdb(), pdb2uniprot()

Examples

# NOT RUN {
pdb.select('P01009', threshold = 0.8)
# }