getMarkers

Get marker rsids (reference SNP cluster IDs) from a specified genome region 
based on markers present in `Glist`.

internal

Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses.
Rohde et al. (2019) <doi:10.1101/503631>.

Peter Soerensen

Statistical Tools for Quantitative Genetic Analyses

Palle Duun Rohde

Izel Fourie Soerensen

getMarkers function

<dl><dt>Glist</dt>
<dd>A list structure with information about genotypes stored on disk.</dd>
<dt>chr</dt>
<dd>A chromosome from which markers are extracted.</dd>
<dt>region</dt>
<dd>A genome region (in base pairs) from which markers are extracted.</dd></dl>

Arguments

Retrieve marker rsids in a specified genome region. — getMarkers

<dl>

<dt>Glist</dt>
<dd>A list structure with information about genotypes stored on disk.</dd>


<dt>chr</dt>
<dd>A chromosome from which markers are extracted.</dd>


<dt>region</dt>
<dd>A genome region (in base pairs) from which markers are extracted.</dd>

</dl>

getMarkers: Retrieve marker rsids in a specified genome region.

Description

Usage

Value

Arguments