mapSets

This function maps sets to rsids. If a `Glist` is provided, `rsids` are extracted from the `Glist`.
It returns a list of matched RSIDs for each set.

internal

Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses.
Rohde et al. (2019) <doi:10.1101/503631>.

Peter Soerensen

Statistical Tools for Quantitative Genetic Analyses

Palle Duun Rohde

Izel Fourie Soerensen

mapSets function

<dl><dt>sets</dt>
<dd>A list of character vectors where each vector represents a set of items. If the names
of the sets are not provided, they are named as "Set1", "Set2", etc.</dd>
<dt>rsids</dt>
<dd>A character vector of RSIDs. If `Glist` is provided, this parameter is ignored.</dd>
<dt>Glist</dt>
<dd>A list containing an element `rsids` which is a character vector of RSIDs.</dd>
<dt>index</dt>
<dd>A logical. If `TRUE` (default), it returns indices of RSIDs; otherwise, it returns the RSID names.</dd></dl>

Arguments

Map Sets to rsids — mapSets

<dl>

<dt>sets</dt>
<dd>A list of character vectors where each vector represents a set of items. If the names
of the sets are not provided, they are named as "Set1", "Set2", etc.</dd>


<dt>rsids</dt>
<dd>A character vector of RSIDs. If `Glist` is provided, this parameter is ignored.</dd>


<dt>Glist</dt>
<dd>A list containing an element `rsids` which is a character vector of RSIDs.</dd>


<dt>index</dt>
<dd>A logical. If `TRUE` (default), it returns indices of RSIDs; otherwise, it returns the RSID names.</dd>

</dl>

mapSets: Map Sets to rsids

Description

Usage

Value

Arguments