geom_qlinerange

a character value indicating the color to use for
    the extreme values (the 10% and 90% quantiles). If <code>NULL</code>,
    these line seqments will not be added.

extreme.color

a character value indicating the color to use
    for the quartiles.  If <code>NULL</code>, these line seqments will not be
    added.

quartile.color

a character value indicating the color to use for
    the mean. If <code>NULL</code>, these line seqments will not be added.

mean.color

a character value indicating the color to use for
    the median. If <code>NULL</code>, these line seqments will not be added.

median.color


  <code>geom_qlinerange</code> uses multiple line segments and points to plot
  quality ranges. By default the 10% and 90% range in plotted in grey,
  the quartile range in orange, and the mean as a point in blue. It is
  used in <code><a rd-options="" href="/link/qualPlot?package=qrqc&version=1.26.0" data-mini-rdoc="qrqc::qualPlot">qualPlot</a></code>.


methods

Graphics

Quickly scans reads and gathers statistics on base and
quality frequencies, read length, k-mers by position, and
frequent sequences. Produces graphical output of statistics for
use in quality control pipelines, and an optional HTML quality
report. S4 SequenceSummary objects allow specific tests and
functionality to be written around the data collected.

Vince Buffalo

qrqc

Quick Read Quality Control

geom_qlinerange function

<code>geom_qlinerange</code> uses multiple line segments and points to plot
  quality ranges. By default the 10% and 90% range in plotted in grey,
  the quartile range in orange, and the mean as a point in blue. It is
  used in <code><a href="qualPlot" rd-options="">qualPlot</a></code>.

geom_qlinerange: Use Line Segments and Points to Plot Quality Statistics by Position in the Read

Description

Usage

Arguments

Value

See Also