qrqc (version 1.26.0)

makeReport-methods: Make an HTML report from a FASTASummary of FASTQSummary object

Description

makeReport takes a FASTQSummary or FASTASummary object, creates an HTML report, and writes it to a file within a directory. The directory naming is incremental so past reports will not be overwritten.

Usage

makeReport(x, outputDir=".")

Arguments

x

an object that is either FASTQSummary or FASTASummary.

outputDir

an optional character argument to to indicate the report output directory. By default, the current directory.

Examples

  ## Load a FASTQ file
  s.fastq <- readSeqFile(system.file('extdata', 'test.fastq', package='qrqc'))

  ## Make and save a report
  makeReport(s.fastq)