qtl (version 1.39-5)

mqmextractmarkers: MQM marker extraction

Description

Extract the real markers from a cross object that includes pseudo markers

Usage

mqmextractmarkers(mqmresult)

Arguments

mqmresult

result from mqmscan, including pseudo markers

Value

Returns a scanone object with the pseudo markers removed

See Also

• The MQM tutorial: http://www.rqtl.org/tutorials/MQM-tour.pdf
• MQM - MQM description and references
• mqmscan - Main MQM single trait analysis
• mqmscanall - Parallellized traits analysis
• mqmaugment - Augmentation routine for estimating missing data
• mqmautocofactors - Set cofactors using marker density
• mqmsetcofactors - Set cofactors at fixed locations
• mqmpermutation - Estimate significance levels
• scanone - Single QTL scanning

Examples

data(multitrait)

multitrait <- fill.geno(multitrait)

result <- mqmscan(multitrait)
newresult <- mqmextractmarkers(result)