qtl (version 1.66)

mqmextractmarkers: MQM marker extraction

Description

Extract the real markers from a cross object that includes pseudo markers

Usage

mqmextractmarkers(mqmresult)

Value

Returns a scanone object with the pseudo markers removed

Arguments

mqmresult

result from mqmscan, including pseudo markers

Author

Ritsert C Jansen; Danny Arends; Pjotr Prins; Karl W Broman

See Also

• The MQM tutorial: https://rqtl.org/tutorials/MQM-tour.pdf

• MQM - MQM description and references

• mqmscan - Main MQM single trait analysis

• mqmscanall - Parallellized traits analysis

• mqmaugment - Augmentation routine for estimating missing data

• mqmautocofactors - Set cofactors using marker density

• mqmsetcofactors - Set cofactors at fixed locations

• mqmpermutation - Estimate significance levels

• scanone - Single QTL scanning

Examples

data(multitrait)

multitrait <- fill.geno(multitrait)

result <- mqmscan(multitrait)
newresult <- mqmextractmarkers(result)