qtl (version 1.66)

summary.fitqtl: Summary of fit of qtl model

Description

Print summary information about the results of fitqtl.

Usage

# S3 method for fitqtl
summary(object, pvalues=TRUE, simple=FALSE, ...)

Value

An object of class summary.fitqtl, which is not all that different than the input, but when printed gives summary information about the results.

Arguments

object

Output from fitqtl.

pvalues

If FALSE, don't include p-values in the summary.

simple

If TRUE, don't include p-values or sums of squares in the summary.

...

Ignored at this point.

Author

Hao Wu; Karl W Broman,

See Also

fitqtl, makeqtl, scanqtl

Examples

data(fake.f2)

# take out several QTLs and make QTL object
qc <- c(1, 8, 13)
qp <- c(26, 56, 28)
fake.f2 <- subset(fake.f2, chr=qc)
fake.f2 <- subset(fake.f2, ind=1:50)
fake.f2 <- calc.genoprob(fake.f2, step=2, err=0.001)
qtl <- makeqtl(fake.f2, qc, qp, what="prob")

# fit model with 3 interacting QTLs interacting
# (performing a drop-one-term analysis)
lod <- fitqtl(fake.f2, pheno.col=1, qtl, formula=y~Q1*Q2*Q3,
              method="hk")
summary(lod)