summary.ripple

Print marker orders, from the output of the function <code>ripple</code>,
 for which the log10 likelihood relative to the initial order is above
 a specified cutoff.

print

Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Broman et al. (2003) <doi:10.1093/bioinformatics/btg112>.

Karl Broman

Tools for Analyzing QTL Experiments

summary.ripple function

<dl> <dt>object</dt>
<dd>An object of class <code>ripple</code>, the output of the
 function <code>ripple</code>.</dd> <dt>lod.cutoff</dt>
<dd>Only marker orders with LOD score (relative to the
 initial order) above this cutoff will be displayed. For output of
 <code>ripple</code> in the case of minimization of the number
 of obligate crossovers, we double this argument and treat it as a
 cutoff for the number of obligate crossovers.</dd> <dt>...</dt>
<dd>Ignored at this point.</dd></dl>

Arguments

Karl W Broman, <a href="/link/broman%40wisc.edu?package=qtl&version=1.66" data-mini-rdoc="qtl::broman@wisc.edu">broman@wisc.edu</a>

Author

Print summary of ripple results — summary.ripple

<dl>

 <dt>object</dt>
<dd>An object of class <code>ripple</code>, the output of the
 function <code>ripple</code>.</dd>

 <dt>lod.cutoff</dt>
<dd>Only marker orders with LOD score (relative to the
 initial order) above this cutoff will be displayed. For output of
 <code>ripple</code> in the case of minimization of the number
 of obligate crossovers, we double this argument and treat it as a
 cutoff for the number of obligate crossovers.</dd>

 <dt>...</dt>
<dd>Ignored at this point.</dd>

</dl>

Karl W Broman, <a href='mailto:broman@wisc.edu'>broman@wisc.edu</a>

summary.ripple: Print summary of ripple results

Description

Usage

Value

Arguments

Author

See Also

Examples