qtl (version 1.66)

summary.scanoneboot: Bootstrap confidence interval for QTL location

Description

Calculates a bootstrap confidence interval for QTL location, using the bootstrap results from scanoneboot.

Usage

# S3 method for scanoneboot
summary(object, prob=0.95, expandtomarkers=FALSE, ...)

Value

An object of class scanone, indicating the position with the maximum LOD, and indicating endpoints for the estimated bootstrap confidence interval.

Arguments

object

Output from scanoneboot.

prob

Desired coverage.

expandtomarkers

If TRUE, the interval is expanded to the nearest flanking markers.

...

Ignored at this point.

Author

Karl W Broman,

See Also

scanoneboot, plot.scanoneboot, lodint, bayesint

Examples

if (FALSE) data(fake.f2)
fake.f2 <- calc.genoprob(fake.f2, step=1, err=0.001)
bootoutput <- scanoneboot(fake.f2, chr=13, method="hk")

summary(bootoutput)