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Extract the real markers from a cross object that includes pseudo markers
mqmextractmarkers(mqmresult)
Returns a scanone object with the pseudo markers removed
result from mqmscan, including pseudo markers
mqmscan
Ritsert C Jansen; Danny Arends; Pjotr Prins; Karl W Broman broman@wisc.edu
The MQM tutorial: https://rqtl.org/tutorials/MQM-tour.pdf
MQM - MQM description and references
MQM
mqmscan - Main MQM single trait analysis
mqmscanall - Parallellized traits analysis
mqmscanall
mqmaugment - Augmentation routine for estimating missing data
mqmaugment
mqmautocofactors - Set cofactors using marker density
mqmautocofactors
mqmsetcofactors - Set cofactors at fixed locations
mqmsetcofactors
mqmpermutation - Estimate significance levels
mqmpermutation
scanone - Single QTL scanning
scanone
data(multitrait) multitrait <- fill.geno(multitrait) result <- mqmscan(multitrait) newresult <- mqmextractmarkers(result)
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