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qtl (version 1.70)

mqmextractmarkers: MQM marker extraction

Description

Extract the real markers from a cross object that includes pseudo markers

Usage

mqmextractmarkers(mqmresult)

Value

Returns a scanone object with the pseudo markers removed

Arguments

mqmresult

result from mqmscan, including pseudo markers

Author

Ritsert C Jansen; Danny Arends; Pjotr Prins; Karl W Broman broman@wisc.edu

See Also

  • The MQM tutorial: https://rqtl.org/tutorials/MQM-tour.pdf

  • MQM - MQM description and references

  • mqmscan - Main MQM single trait analysis

  • mqmscanall - Parallellized traits analysis

  • mqmaugment - Augmentation routine for estimating missing data

  • mqmautocofactors - Set cofactors using marker density

  • mqmsetcofactors - Set cofactors at fixed locations

  • mqmpermutation - Estimate significance levels

  • scanone - Single QTL scanning

Examples

Run this code
data(multitrait)

multitrait <- fill.geno(multitrait)

result <- mqmscan(multitrait)
newresult <- mqmextractmarkers(result)

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