data(multitrait)
multitrait <- subset(multitrait, chr=1:2, ind=!apply(multitrait$pheno, 1, function(a) any(is.na(a))))
multitrait$pheno <- multitrait$pheno[,1:3]
multitrait <- fill.geno(multitrait) # impute missing genotype data
result <- mqmscanall(multitrait, logtransform=TRUE)
mqmplot.multitrait(result,"lines")
mqmplot.multitrait(result,"contour")
mqmplot.multitrait(result,"image")
mqmplot.multitrait(result,"3Dplot")
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