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Plot a histogram of the permutation results from a two-dimensional, two-QTL genome scan.
# S3 method for scantwoperm plot(x, lodcolumn=1, include_rug=TRUE, ...)
None.
An object of class "scantwoperm", as output by scantwo when n.perm is specified.
"scantwoperm"
scantwo
n.perm
This indicates the LOD score column to plot. This should be a single number between 1 and the number of LOD columns in the object input.
If TRUE, include a call to rug.
rug
Passed to the function hist when it is called.
hist
Karl W Broman, broman@wisc.edu
The function plots a histogram of the permutation results obtained by scantwo when n.perm is specified. Separate histograms are provided for the five LOD scores, full, fv1, int, add, and av1.
full
fv1
int
add
av1
scantwo, summary.scantwoperm
summary.scantwoperm
data(fake.bc) fake.bc <- calc.genoprob(fake.bc) operm2 <- scantwo(fake.bc, method="hk", n.perm=10) plot(operm2)
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