qtl (version 1.70)

replace.map: Replace the genetic map of a cross

Description

Replace the map portion of a cross object.

Usage

replace.map(cross, map)
# S3 method for cross
replacemap(object, map)

Value

The input cross object with the genetic map replaced by the input map. Maps for results from

calc.genoprob, sim.geno and

argmax.geno are also replaced, using interpolation if necessary.

Arguments

cross

An object of class cross. See read.cross for details.

object

Same as cross.

map

A list containing the new genetic map. This must be the same length and with the same marker names as that contained in cross.

Author

Karl W Broman,

See Also

pull.map, est.map

Examples

data(fake.f2)
fake.f2 <- subset(fake.f2, chr=18:19)
newmap <- est.map(fake.f2)
plotMap(fake.f2, newmap)
fake.f2 <- replace.map(fake.f2, newmap)