qtl (version 1.70)

summary.comparegeno: Print pairs of individuals with similar genotype data.

Description

Prints a summary the output from comparegeno that includes pairs of individuals whose proportion of matching genotypes is above a chosen threshold.

Usage

# S3 method for comparegeno
summary(object, thresh=0.9, ...)

Value

A data frame with each row being a pair of individuals and columns including the individual identifiers (via getid, or just as numeric indexes) along with the proportion of matching genotypes.

Arguments

object

An object of class comparegeno, the output of the function comparegeno.

thresh

Threshold on the proportion of matching genotypes.

...

Ignored at this point.

Author

Karl W Broman,

See Also

comparegeno, plot.comparegeno

Examples

data(fake.f2)
cg <- comparegeno(fake.f2)
summary(cg, 0.7)