chrom.bands

chrom.bands.hg18

chrom.bands.hg19

chrom.bands.hg38

chrom.bands.mm10


Dataset used to produce human chromosomal ideograms for plotting purposes.


datasets

Implements quantile smoothing as introduced in: Quantile
smoothing of array CGH data; Eilers PH, de Menezes RX;
Bioinformatics. 2005 Apr 1;21(7):1146-53.

Jan Oosting

quantsmooth

Quantile smoothing and genomic visualization of array data

chrom.bands function

A data frame with 4068 observations on the following 12 variables.
  <dl>
    <dt><code>chr</code></dt><dd>a character vector</dd> <dt><code>arm</code></dt><dd>a character vector</dd> <dt><code>band</code></dt><dd>a character vector</dd> <dt><code>ISCN.top</code></dt><dd>a numeric vector</dd> <dt><code>ISCN.bot</code></dt><dd>a numeric vector</dd> <dt><code>bases.top</code></dt><dd>a numeric vector</dd> <dt><code>bases.bot</code></dt><dd>a numeric vector</dd> <dt><code>stain</code></dt><dd>a character vector</dd> <dt><code>cM.top</code></dt><dd>a numeric vector</dd> <dt><code>cM.bot</code></dt><dd>a numeric vector</dd> <dt><code>n.markers</code></dt><dd>a numeric vector</dd> <dt><code>p.markers</code></dt><dd>a numeric vector</dd> </dl> 

Format

ftp://ftp.ncbi.nlm.nih.gov/genomes/H\_sapiens/maps/mapview/BUILD.35.1/ideogram.gz.

Source

Dataset used to produce human chromosomal ideograms for plotting purposes.

chrom.bands: Dataset of human chromosomes and their banding patterns

Description

Usage

Arguments

Format

Source

Details

References