Usage
paintCytobands(chrom, pos = c(0, 0), units = "hg19", width = 0.4, length.out, bands = "major", orientation = c("h","v"), legend = TRUE, cex.leg = 0.7, bleach = 0, ...)
Arguments
chrom
chromosomal id, chromosome to plot 1:22,X,Y
pos
numeric vector of length 2, position in the plot to start the plot
units
character or data.frame, type of units for genomic data, or a dataframe with UCSC cytoband data, see lengthChromosome width
numeric, width of the chromosome, the chromosome is plotted between pos[2] and pos[2]-width
length.out
numeric, if given, the chromosome will have this length in the plot
bands
if not equal to "major", then also the minor bands will be plotted
orientation
chromosome is plotted either Horizontally to the right of
the starting point or Vertically down from the starting point
legend
logical, if TRUE then the bandnames are plotted next to the chromosome
cex.leg
numeric, relative size of legend text
bleach
numeric [0,1], proportion by which to bleach the chromosome
...
extra parameters for plot