quincunx (version 0.1.7)

open_in_pgs_catalog: Browse PGS Catalog entities from the PGS Catalog Web Graphical User Interface

Description

This function launches the web browser and opens a tab for each identifier on the PGS Catalog web graphical user interface: https://www.pgscatalog.org/.

Usage

open_in_pgs_catalog(
  identifier = NULL,
  pgs_catalog_entity = c("pgs", "pgp", "pss", "efo")
)

Value

Returns TRUE if successful, or FALSE otherwise. But note that this function is run for its side effect.

Arguments

identifier

A vector of identifiers. The identifiers can be: PGS, PGP, PSS or EFO identifiers.

pgs_catalog_entity

Either 'pgs' (default), 'pgp', 'pss', 'efo'. This argument indicates the type of the identifiers passed in identifier.

Examples

if (FALSE) { # interactive()
# Open in PGS scores Catalog Web Graphical User Interface
open_in_pgs_catalog(c('PGS000001', 'PGS000002'))

# Open PGS Catalog Publications
open_in_pgs_catalog(c('PGP000001', 'PGP000002'),
  pgs_catalog_entity = 'pgp')

# Open Sample Sets (PSS)
open_in_pgs_catalog(c('PSS000001', 'PSS000002'),
  pgs_catalog_entity = 'pss')

# Open EFO traits (EFO)
open_in_pgs_catalog(c('EFO_0001645', 'MONDO_0007254'),
  pgs_catalog_entity = 'efo')
}