cohorts-class

The cohorts object consists of two tables (slots) that combined form a
relational database of a subset of cohorts. Each cohort is an observation
(row) in the <code>cohorts</code> table (first table).

Programmatic access to the 'PGS' Catalog.
This package provides easy access to 'PGS' Catalog data by
accessing the REST API <https://www.pgscatalog.org/rest/>.

Ramiro Magno

quincunx

REST API Client for the 'PGS' Catalog

Isabel Duarte

Ana-Teresa Maia

CINTESIS 

Pattern Institute 

cohorts-class function

<dl>
<dt><code>cohorts</code></dt>
<dd>A table of cohorts. Each cohort (row) is identified by its
<code>cohort_symbol</code>. Columns:<dl>
<dt>cohort_symbol</dt>
<dd>Cohort symbol. Example: <code>"CECILE"</code>.</dd></dl></dd></dl><dt>cohort_name</dt>
<dd>Cohort full name. Example: <code>"CECILE Breast Cancer
Study"</code>.</dd>

<dt><code>pgs_ids</code></dt>
<dd>A table of cohorts and their associated polygenic scores
identifiers. Columns:<dl>
<dt>cohort_symbol</dt>
<dd>Cohort symbol. Example: <code>"CECILE"</code>.</dd></dl></dd><dt>pgs_id</dt>
<dd>Polygenic Score (PGS) identifier.</dd><dt>stage</dt>
<dd>Sample stage: either <code>"gwas/dev"</code> or <code>"eval"</code>.</dd>

Slots

An S4 class to represent a set of cohorts — cohorts-class

<dl>
<dt><code>cohorts</code></dt>
<dd>A table of cohorts. Each cohort (row) is identified by its
<code>cohort_symbol</code>. Columns:<dl>
<dt>cohort_symbol</dt>
<dd>Cohort symbol. Example: <code>"CECILE"</code>.</dd>

<dt>cohort_name</dt>
<dd>Cohort full name. Example: <code>"CECILE Breast Cancer
Study"</code>.</dd>


</dl></dd>


<dt><code>pgs_ids</code></dt>
<dd>A table of cohorts and their associated polygenic scores
identifiers. Columns:<dl>
<dt>cohort_symbol</dt>
<dd>Cohort symbol. Example: <code>"CECILE"</code>.</dd>

<dt>pgs_id</dt>
<dd>Polygenic Score (PGS) identifier.</dd>

<dt>stage</dt>
<dd>Sample stage: either <code>"gwas/dev"</code> or <code>"eval"</code>.</dd>


</dl></dd>


</dl>

cohorts-class: An S4 class to represent a set of cohorts

Description

Arguments

Slots