A function to split apart bootstrap data files created in data.ss_new. To
get bootstraps, the input "N bootstrap file to produce" in starter.ss needs
to be 3 or greater. The function can either create a file for just the
input data (if inputs=TRUE
), a file for just the MLE values
(if MLE = TRUE
), or separate files for each of the bootstraps
(if inputs=FALSE
and MLE=FALSE
).
SS_splitdat(
inpath = "working_directory",
outpath = "working_directory",
inname = "data.ss_new",
outpattern = "BootData",
number = FALSE,
verbose = TRUE,
fillblank = TRUE,
MLE = TRUE,
inputs = FALSE,
notes = ""
)
Directory containing the input file. By default the working directory given by getwd() is used. Default="working_directory".
Directory into which the output file will be written. Default="working_directory".
File name of input data file to be split. Default="Data.SS_New".
File name of output data file. Default="BootData".
Append bootstrap number to the file name chosen in
outpattern
? Default=F.
Provide richer command line info of function progress? Default=TRUE.
Replace blank lines with "#". Helps with running on linux. Default=TRUE.
Grab the maximum likelihood values from the second block in Data.SS_New (instead of bootstrap values or copies of inputs)? Default=TRUE.
Grab the copy of the input values values from the first block in Data.SS_New (instead of MLE or bootstrap values)? Default=F.
Notes to the top of the new file (comment indicator "#C" will be added). Default="".