Plots the spawning output with and without fishing mortality
SSplotDynamicB0(
replist,
ylab = "Spawning biomass (mt)",
equilibrium = TRUE,
forecast = FALSE,
yrs = "all",
plot = TRUE,
print = FALSE,
plotdir = "default",
verbose = TRUE,
uncertainty = TRUE,
legend = TRUE,
legendlabels = c("equilibrium", "without fishing", "with fishing"),
legendloc = "bottom",
col = c("blue", "red"),
lty = 1,
lwd = 2,
add = FALSE,
pwidth = 6.5,
pheight = 5,
punits = "in",
res = 300,
ptsize = 10,
mainTitle = FALSE,
mar = NULL
)A list object created by SS_output().
Y-axis label. Default is "Spawning biomass (mt)" which is replaced
by "Spawning output" for models with replist[["SpawnOutputUnits"]] == "numbers"
Show equilibrium in plot? Applies whether "yrs" is specified or not.
Show forecast years in plot? Only applies if yrs = "all".
Which years to include. Default "all" will show startyr to endyr + 1
modified by the arguments forecast.
Plot to active plot device?
Print to PNG files?
Directory where PNG files will be written. By default it will be the directory where the model was run.
A logical value specifying if output should be printed to the screen.
Show 95% uncertainty intervals around point estimates? These intervals will only appear when uncertainty in the dynamic B0 estimates is available via the control file settings for "read specs for more stddev reporting".
Add a legend?
Character vector with labels for the unfished
equilibrium point (if equilibrium = TRUE) and the two lines showing
spawning biomass or output without and with fishing.
Location of legend. Either a string like "topleft" or a
vector of two numeric values representing the fraction of the maximum in
the x and y dimensions, respectively. See help("legend") for more info on
the string options.
Optional vector of colors to be used for the two lines (single value will apply to both lines).
Optional vector of line types to be used for the two lines (single value will apply to both lines).
Optional vector of line widths to be used for the two lines (single value will apply to both lines).
add to existing plot
Default width of plots printed to files in units of
punits. The default is pwidth=6.5.
Height of plots printed to png files in units of punits.
Default is designed to allow two plots per page, with pheight_tall used
for plots that work best with a taller format and a single plot per page.
Units for pwidth and pheight. Can be "px"
(pixels), "in" (inches), "cm" (centimeters), or "mm" (millimeters).
The default is punits="in".
Resolution of plots printed to files.
The default is res = 300.
Point size for plotted text in plots printed to files (see
help("png") in R for details).
Logical indicating if a title should be included at the top (not yet implemented for all plots)
Either NULL to allow the default (which depends on whether the main title is included or not) or a numerical vector of the form c(bottom, left, top, right) which gives the number of lines of margin to be specified on the four sides of the plot, which is passed to par().