Plot time series of SPR, 1-SPR, the chosen SPR ratio and the phase plot.
SSplotSPR(
replist,
add = FALSE,
plot = TRUE,
print = FALSE,
uncertainty = TRUE,
subplots = 1:4,
forecastplot = FALSE,
col1 = "black",
col2 = "blue",
col3 = "green3",
col4 = "red",
sprtarg = "default",
btarg = "default",
labels = c("Year", "SPR", "1-SPR", "Relative fishing intensity",
"Relative spawning output"),
pwidth = 6.5,
pheight = 5,
punits = "in",
res = 300,
ptsize = 10,
cex.main = 1,
plotdir = "default",
verbose = TRUE
)A list object created by SS_output().
add to existing plot (not yet implemented)
plot to active plot device?
print to PNG files?
include plots showing uncertainty?
vector controlling which subplots to create Numbering of subplots is as follows:
timeseries of SPR,
timeseries of 1 - SPR,
timeseries of SPR ratio (as specified in the starter file), and
phase plot of Biomass ratio vs SPR ratio (as specified in the starter file).
Include forecast years in plot?
first color used
second color used
third color used
fourth color used
F/SPR proxy target. "default" chooses based on model output, where models which have SPR_report_basis = 0 or 1 specified in the starter file will use the SPR target specified in the forecast file. Models which have SPR_report_basis = 2 will use SPR at MSY for the SPR target and models which have the SPR_report_basis = 3 will use SPR at Btarget for the SPR target in these plots. Zero or negative values of sprtarg input here will cause no horizontal line to be plotted.
target depletion to be used in plots showing depletion. May be omitted by setting to NA. "default" chooses based on model output.
vector of labels for plots (titles and axis labels)
width of plot
height of plot
units for PNG file
Resolution of plots printed to files.
The default is res = 300.
point size for PNG file
character expansion for plot titles
directory where PNG files will be written. by default it will be the directory where the model was run.
report progress to R GUI?