Plots the summary F (or harvest rate) as set up in the starter file Needs a lot of work to be generalized
SSplotSummaryF(
replist,
yrs = "all",
Ftgt = NA,
ylab = "Summary Fishing Mortality",
plot = TRUE,
print = FALSE,
plotdir = "default",
verbose = TRUE,
uncertainty = TRUE,
add = FALSE,
pwidth = 6.5,
pheight = 5,
punits = "in",
res = 300,
ptsize = 10,
mar = NULL
)A list object created by SS_output().
Which years to include.
Target F where horizontal line is shown.
Y-axis label.
Plot to active plot device?
Print to PNG files?
Directory where PNG files will be written. By default it will be the directory where the model was run.
Verbose output to R console?
Show 95% uncertainty intervals around point estimates?
add to existing plot
Default width of plots printed to files in units of
punits. The default is pwidth=6.5.
Height of plots printed to png files in units of punits.
Default is designed to allow two plots per page, with pheight_tall used
for plots that work best with a taller format and a single plot per page.
Units for pwidth and pheight. Can be "px"
(pixels), "in" (inches), "cm" (centimeters), or "mm" (millimeters).
The default is punits="in".
Resolution of plots printed to files.
The default is res = 300.
Point size for plotted text in plots printed to files (see
help("png") in R for details).
Either NULL to allow the default (which depends on whether the main title is included or not) or a numerical vector of the form c(bottom, left, top, right) which gives the number of lines of margin to be specified on the four sides of the plot, which is passed to par().