Plot observed and expected tag recaptures in aggregate and by tag group.
SSplotTags(
replist = replist,
subplots = 1:10,
latency = NULL,
taggroups = NULL,
rows = 1,
cols = 1,
tagrows = 3,
tagcols = 3,
plot = TRUE,
print = FALSE,
pntscalar = 2.6,
minnbubble = 8,
pwidth = 6.5,
pheight = 5,
punits = "in",
ptsize = 10,
res = 300,
cex.main = 1,
col1 = rgb(0, 0, 1, 0.7),
col2 = "red",
col3 = "grey95",
col4 = "grey70",
labels = c("Year", "Frequency", "Tag Group", "Fit to tag recaptures by tag group",
"Post-latency tag recaptures aggregated across tag groups",
"Observed tag recaptures by year and tag group",
"Residuals for post-latency tag recaptures: (obs-exp)/sqrt(exp)",
"Observed and expected post-latency tag recaptures by year and tag group",
"Summarized observed and expected numbers of recaptures by fleet",
"Pearson residuals by tag group"),
plotdir = "default",
verbose = TRUE
)A list object created by SS_output().
vector controlling which subplots to create
period of tag mixing to exclude from plots (in future could be included in SS output)
which tag groups to include in the plots. Default=NULL causes all groups to be included.
number or rows of panels for regular plots
number or columns of panels for regular plots
number or rows of panels for multi-panel plots
number or columns of panels for multi-panel plots
plot to active plot device?
print to PNG files?
maximum bubble size for balloon plots; each plot scaled independently based on this maximum size and the values plotted. Often some plots look better with one value and others with a larger or smaller value. Default=2.6
minimum number of years below which blank years will be added to bubble plots to avoid cropping
default width of plots printed to files in units of
punits. Default=7.
default height width of plots printed to files in units of
punits. Default=7.
units for pwidth and pheight. Can be "px"
(pixels), "in" (inches), "cm" or "mm". Default="in".
point size for plotted text in plots printed to files (see help("png") in R for details). Default=12.
Resolution of plots printed to files.
The default is res = 300.
character expansion parameter for plot titles
color for bubbles
color for lines with expected values
shading color for observations within latency period
shading color for observations after latency period
vector of labels for plots (titles and axis labels)
directory where PNG files will be written. by default it will be the directory where the model was run.
return updates of function progress to the R GUI?