Summarize various quantities from the model output collected by
SSgetoutput()
and return them in a list of tables and vectors.
SSsummarize(
biglist,
sizeselfactor = "Lsel",
ageselfactor = "Asel",
selfleet = NULL,
selyr = "startyr",
selgender = 1,
SpawnOutputUnits = NULL,
lowerCI = 0.025,
upperCI = 0.975,
verbose = TRUE
)
A list of lists, one for each model. The individual lists can
be created by SS_output()
or the list of lists can be
created by SSgetoutput()
(which iteratively calls
SS_output()
).
A string or vector of strings indicating which elements of the selectivity at length output to summarize. Default=c("Lsel").
A string or vector of strings indicating which elements of the selectivity at age output to summarize. Default=c("Asel").
Vector of fleets for which selectivity will be summarized. NULL=all fleets. Default=NULL.
String or vector of years for which selectivity will be summarized. NOTE: NOT CURRENTLY WORKING. Options: NULL=all years, "startyr" = first year.
Vector of genders (1 and/or 2) for which selectivity will be summarized. NULL=all genders. Default=NULL.
Optional single value or vector of "biomass" or "numbers" giving units of spawning for each model.
Quantile for lower bound on calculated intervals. Default = 0.025 for 95% intervals.
Quantile for upper bound on calculated intervals. Default = 0.975 for 95% intervals.
A logical value specifying if output should be printed to the screen.