rCUR (version 1.3)

plotLeverage: Function to plot leverage scores

Description

Function to plot the individual values and uniform level of leverage scores. The most influental features may be higlighted.

Usage

plotLeverage(x, C=TRUE, mplr=1000, top.n=100,  top.col='red', top.pch=16, ul.col='red', ul.lty=2, ...)

Arguments

x

object of class CURobj-class

C

logical, if it is TRUE, then calculated the rank for the leverage scores belongs to columns, if FALSE, then to rows

mplr

multiplier of leverage scores

top.n

number of highlighting items from top of leverage score list

top.col

color of highligting points

top.pch

pch of highligting points, see par()

ul.col

color of the line of leverage score uniform level

ul.lty

line type of leverage score uniform level

...

further graphical parameters of function plot()

References

Mahoney M. W. and Drineas P. (2009) CUR matrix decompositions for improved data analysis. PNAS, 106(3):697-702

Andras Bodor, Istvan Csabai, Michael W Mahoney and Norbert Solymosi rCUR:an R package for CUR matrix decomposition BMC Bioinformatics 2012, 13:103 doi:10.1186/1471-2105-13-103

Examples

data(STTm)
res <- CUR(STTm, 31, 12, 3)
plotLeverage(res, C=FALSE, top.n=10, las=1)