readFASTA

The name of the file which the sequences in fasta format are
            to be read from. If it does not contain an absolute or
            relative path, the file name is relative to the current
            working directory, <code><a rd-options="" href="/link/getwd?package=rDNAse&version=1.1-1" data-mini-rdoc="rDNAse::getwd">getwd</a></code>.
            The default here is to read the <code>example.fasta</code> file which
            is present in the <code>protseq</code> directory of the protr package.

file

If set to <code>TRUE</code>, lines starting with a semicolon ';'
are ignored. Default value is <code>TRUE</code>.

legacy.mode

If set to <code>TRUE</code>, only sequences as returned without
               attempt to modify them or to get their names and
               annotations (execution time is divided approximately
               by a factor 3). Default value is <code>FALSE</code>.

seqonly

read

fasta

Comprehensive toolkit for generating various numerical                                 representation schemes of DNA sequence. The descriptors and similarity
scores included are extensively used in bioinformatics and chemogenomics.

Minfeng Zhu

rDNAse

Generating Various Numerical Representation Schemes of DNA
Sequences

readFASTA function

The name of the file which the sequences in fasta format are
            to be read from. If it does not contain an absolute or
            relative path, the file name is relative to the current
            working directory, <code><a rd-options='' href='getwd'>getwd</a></code>.
            The default here is to read the <code>example.fasta</code> file which
            is present in the <code>protseq</code> directory of the protr package.

readFASTA: Read DNA/RNA Sequences in FASTA Format

Description

Usage

Arguments

Value

Details

References

Examples