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rMR (version 1.1.0)

Importing Data from Loligo Systems Software, Calculating Metabolic Rates and Critical Tensions

Description

Analysis of oxygen consumption data generated by Loligo (R) Systems respirometry equipment. The package includes a function for loading data output by Loligo's 'AutoResp' software (get.witrox.data()), functions for calculating metabolic rates over user-specified time intervals, extracting critical points from data using broken stick regressions based on Yeager and Ultsch (), and easy functions for converting between different units of barometric pressure.

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Version

Install

install.packages('rMR')

Monthly Downloads

275

Version

1.1.0

License

GPL-3

Maintainer

Last Published

January 21st, 2018

Functions in rMR (1.1.0)

fishMR

Gnathonemus Respirometry Trial Data
get.pcrit

Calculate Critical Tension for Rate Processes
get.witrox.data

Load Data from 'AutoResp' Software Generated .txt Files
plotRaw

Plotting Data from Witrox
DO.unit.convert

Convert Between Different Common Units of DO Concentration
Eq.Ox.conc

Equilibrium Concentration of Dissolved Oxygen in Water
rMR-package

Importing Data from Loligo Systems Software Output, Calculating Metabolic Rates and Critical Tensions
sumsq

Sum of squares
Barom.Press

Estimate Barometric Pressure
DO.saturation

Calculate Oxygen Saturation of Water
tot.rss

Total Residual Sum of Squares for Broken Stick Model
MR.loops

Calculate Metabolic Rates from Multiple Closed Respirometry Loops
background.resp

Determine the Background Respiration in a Respirometer