rMVP (version 0.99.14.1)

MVP.Data.Numeric2MVP: MVP.Data.Numeric2MVP: To transform Numeric data to MVP package Author: Haohao Zhang Build date: Sep 12, 2018

Description

MVP.Data.Numeric2MVP: To transform Numeric data to MVP package Author: Haohao Zhang Build date: Sep 12, 2018

Usage

MVP.Data.Numeric2MVP(num_file, out = "mvp", maxLine = 10000,
  priority = "speed", row_names = FALSE, col_names = FALSE,
  type.geno = "char", auto_transpose = TRUE, verbose = TRUE)

Arguments

num_file

Genotype in Numeric format (0,1,2)

out

the name of output file

maxLine

the max number of line to write to big matrix for each loop

priority

'memory' or 'speed'

row_names

whether the numeric genotype has row names

col_names

whether the numeric genotype has column names

type.geno

the type of genotype elements

auto_transpose

whether to detecte the row and column

verbose

whether to print the reminder

Value

number of individuals and markers. Output files: genotype.desc, genotype.bin: genotype file in bigmemory format phenotype.phe: ordered phenotype file, same taxa order with genotype file map.map: SNP information

Examples

# NOT RUN {
numericPath <- system.file("extdata", "04_numeric", "mvp.num", package = "rMVP")
MVP.Data.Numeric2MVP(numericPath, "rMVP.test.num")
# }