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rPlant (version 2.16)

Interface to the Agave API

Description

Provides an interface to the the many computational resources iPlant offers through their RESTful application programming interface, see for more information about iPlant, and for its APIs. Currently, 'rPlant' functions interact with the iPlant Agave API, the Taxonomic Name Resolution Service API, and the Phylotastic Taxosaurus API. Before using 'rPlant', users will have to register with the iPlant Collaborative. See for more information on the Agave API and to register with iPlant.

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Version

Install

install.packages('rPlant')

Monthly Downloads

82

Version

2.16

License

GPL (>= 2)

Maintainer

Last Published

April 3rd, 2016

Functions in rPlant (2.16)

TNRS

Resolving Names via TNRS
FaST_LMM

FaST-LMM-2.07
Muscle

MUSCLE alignment
rplant-package

rplant
ListDir

Directory management
SubmitJob

Executing analytical applications
ListApps

Deployed applications
RAxML

RAxML
Fasttree

FastTree Dispatcher
ClustalW

ClustalW alignment
Validate

Authentication functions
UploadFile

File management
Mafft

MAFFT Multiple Sequence Alignment
Internal functions

Internal Functions
PLINKConversion

PLINKConversion
Data Sets

Data Sets
PLINK

PLINK-1.07