HillS

Computes Hill's diversity index in a non-parallelized (sequential) manner.

internal

Provides methods to calculate diversity indices on numerical matrices
based on information theory, as described in Rocchini, Marcantonio and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039>,
and Rocchini et al. (2021) <doi:10.1101/2021.01.23.427872>.

Matteo Marcantonio

rasterdiv

Diversity Indices for Numerical Matrices

Martina Iannacito

Elisa Marchetto

Elisa Thouverai

Michele Torresani

Daniele Da Re

Clara Tattoni

Giovanni Bacaro

Saverio Vicario

Carlo Ricotta

Duccio Rocchini

HillS function

<dl><dt>x</dt>
<dd>Input data.</dd>
<dt>window</dt>
<dd>Half of the side of the square moving window.</dd>
<dt>alpha</dt>
<dd>Alpha value for the order of diversity in Hill's Index.</dd>
<dt>na.tolerance</dt>
<dd>A numeric value between 0.0 and 1.0, which indicates the proportion of NA values that will be tolerated to calculate Hill's index in each moving window over <code>x</code>. If the relative proportion of NA's in a moving window is greater than na.tolerance, then the value of the window will be set as NA; otherwise, the index will be calculated considering the non-NA values. Default value is 1.0 (i.e., full tolerance for NA's).</dd>
<dt>debugging</dt>
<dd>A boolean variable set to FALSE by default. If TRUE, additional messages will be printed for debugging purposes.</dd></dl>

Arguments

Marcantonio Matteo <a href="/link/marcantoniomatteo%40gmail.com?package=rasterdiv&version=0.3.5" data-mini-rdoc="rasterdiv::marcantoniomatteo@gmail.com">marcantoniomatteo@gmail.com</a>, Martina Iannacito <a href="/link/martina.iannacito%40inria.fr?package=rasterdiv&version=0.3.5" data-mini-rdoc="rasterdiv::martina.iannacito@inria.fr">martina.iannacito@inria.fr</a>, Duccio Rocchini <a href="/link/duccio.rocchini%40unibo.it?package=rasterdiv&version=0.3.5" data-mini-rdoc="rasterdiv::duccio.rocchini@unibo.it">duccio.rocchini@unibo.it</a>

Author

Sequential Hill's diversity index — HillS

<dl>

<dt>x</dt>
<dd>Input data.</dd>


<dt>window</dt>
<dd>Half of the side of the square moving window.</dd>


<dt>alpha</dt>
<dd>Alpha value for the order of diversity in Hill's Index.</dd>


<dt>na.tolerance</dt>
<dd>A numeric value between 0.0 and 1.0, which indicates the proportion of NA values that will be tolerated to calculate Hill's index in each moving window over <code>x</code>. If the relative proportion of NA's in a moving window is greater than na.tolerance, then the value of the window will be set as NA; otherwise, the index will be calculated considering the non-NA values. Default value is 1.0 (i.e., full tolerance for NA's).</dd>


<dt>debugging</dt>
<dd>A boolean variable set to FALSE by default. If TRUE, additional messages will be printed for debugging purposes.</dd>

</dl>

Marcantonio Matteo <a href='mailto:marcantoniomatteo@gmail.com'>marcantoniomatteo@gmail.com</a>, Martina Iannacito <a href='mailto:martina.iannacito@inria.fr'>martina.iannacito@inria.fr</a>, Duccio Rocchini <a href='mailto:duccio.rocchini@unibo.it'>duccio.rocchini@unibo.it</a>

HillS: Sequential Hill's diversity index

Description

Usage

Value

Arguments

Author

See Also