rbamtools (version 2.0.1)

bamHeader-class: Class "bamHeader"

Description

bamHeader represents Data contained in the header Section of BAM-files.

Objects from the Class

Objects can be created by calls of the form hl<-new("bamHeader").

Examples

bam_file <- system.file("extdata", "accepted_hits.bam", package="rbamtools")
reader<-bamReader(bam_file)
isOpen(reader)
header<-getHeader(reader)
headLine<-getHeaderLine(header)
readGroup<-getHeaderReadGroup(header)
headProg<-getHeaderProgram(header)
headTxt<-getHeaderText(header)
bamClose(reader)