rbamtools (version 2.0.1)

headerProgram-class: Class "headerProgram"

Description

headerProgram represents Data contained in the header Section of BAM-files.

Objects from the Class

Objects can be created by calls of the form hl<-new("headerProgram").

Examples

bam_file <- system.file("extdata", "accepted_hits.bam", package="rbamtools")
reader<-bamReader(bam_file)
isOpen(reader)
header<-getHeader(reader)
headProg<-getHeaderProgram(header)
getVal(headProg,"PN")
setVal(headProg,"PN","bwa")
l<-as.list(headProg)
ht<-getHeaderText(headProg)
bamClose(reader)