rbamtools (version 2.0.1)

headerReadGroup-class: Class "headerReadGroup"

Description

headerReadGroup represents Data contained in the header Section of BAM-files.

Objects from the Class

Objects can be created by calls of the form hl<-new("headerReadGroup").

Examples

bam_file <- system.file("extdata", "accepted_hits.bam", package="rbamtools")
reader<-bamReader(bam_file)
isOpen(reader)
header<-getHeader(reader)
readGroup<-getHeaderProgram(header)
getVal(readGroup,"ID")
setVal(readGroup,"ID","newID")
l<-as.list(readGroup)
txt<-getHeaderText(readGroup)
bamClose(reader)