bi_open

This function opens an NetCDF file
The file can be specified as a string to the filepath, in which
case a NetCDF connection is opened, or directly as a NetCDF connection.

internal

Provides a complete interface to 'LibBi', a library for Bayesian
inference (see <https://libbi.org> and Murray, 2015
<doi:10.18637/jss.v067.i10> for more information). This includes functions
for manipulating 'LibBi' models, for reading and writing 'LibBi'
input/output files, for converting 'LibBi' output to provide traces for use
with the coda package, and for running 'LibBi' to conduct inference.

Sebastian Funk

Interface to 'LibBi'

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

Sam Abbott

bi_open function

<dl><dt>x</dt>
<dd>either a path to a NetCDF file, or a NetCDF connection created using
<code>nc_open</code>, or a <code>libbi</code> object from which to read the
output</dd>
<dt>file</dt>
<dd>file to open (out of "input", "init", "obs", "output"), if
<code>x</code> is given as a <code>libbi</code> object; by default, will read output
file</dd></dl>

Arguments

Bi Open — bi_open

<dl>

<dt>x</dt>
<dd>either a path to a NetCDF file, or a NetCDF connection created using
<code>nc_open</code>, or a <code>libbi</code> object from which to read the
output</dd>


<dt>file</dt>
<dd>file to open (out of "input", "init", "obs", "output"), if
<code>x</code> is given as a <code>libbi</code> object; by default, will read output
file</dd>

</dl>

bi_open: Bi Open

Description

Usage

Value

Arguments