filter

filter.libbi

filter.bi_model

The method <code>filter</code> launches <code>libbi</code> to filter state trajectories.
 See the options to <code>run.libbi</code> for how to specify the various
 components of sampling with LibBi, and the LibBi manual for all options
 that can be passed when the client is <code>filter</code>.
If <code>x</code> is given as a 'bi_model', a <code>libbi</code> object will be
 created from the model For the help page of the base R <code>filter</code>
 function, see <code><a href="/link/filter?package=rbi&version=1.0.0" data-mini-rdoc="rbi::filter">filter</a></code>.

Provides a complete interface to 'LibBi', a library for Bayesian
inference (see <https://libbi.org> and Murray, 2015
<doi:10.18637/jss.v067.i10> for more information). This includes functions
for manipulating 'LibBi' models, for reading and writing 'LibBi'
input/output files, for converting 'LibBi' output to provide traces for use
with the coda package, and for running 'LibBi' to conduct inference.

Sebastian Funk

Interface to 'LibBi'

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

Sam Abbott

filter function

<dl><dt>x</dt>
<dd>a <code>libbi</code> or <code>bi_model</code> object, or the name
of a file containing the model</dd>
<dt>...</dt>
<dd>options to be passed to <code>run.libbi</code></dd></dl>

Arguments

The method <code>filter</code> launches <code>libbi</code> to filter state trajectories.
 See the options to <code>run.libbi</code> for how to specify the various
 components of sampling with LibBi, and the LibBi manual for all options
 that can be passed when the client is <code>filter</code>.
If <code>x</code> is given as a 'bi_model', a <code>libbi</code> object will be
 created from the model For the help page of the base R <code>filter</code>
 function, see <code><a href='https://rdrr.io/r/stats/filter.html'>filter</a></code>.

Using the LibBi wrapper to filter — filter

<dl>

<dt>x</dt>
<dd>a <code>libbi</code> or <code>bi_model</code> object, or the name
of a file containing the model</dd>


<dt>...</dt>
<dd>options to be passed to <code>run.libbi</code></dd>

</dl>

filter: Using the LibBi wrapper to filter

Description

Usage

Value

Arguments