var_names

Get variable names of one or more type(s)
This returns all variable names of a certain type ("param", "state", "obs",
 "noise", "const") contained in the model of a <code>libbi</code> object

Provides a complete interface to 'LibBi', a library for Bayesian
inference (see <https://libbi.org> and Murray, 2015
<doi:10.18637/jss.v067.i10> for more information). This includes functions
for manipulating 'LibBi' models, for reading and writing 'LibBi'
input/output files, for converting 'LibBi' output to provide traces for use
with the coda package, and for running 'LibBi' to conduct inference.

Sebastian Funk

Interface to 'LibBi'

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

Sam Abbott

var_names function

<dl><dt>x</dt>
<dd>a <code>bi_model</code> object</dd>
<dt>vars</dt>
<dd>a character vector of variable names; if given, only these
variables names will be considered</dd>
<dt>type</dt>
<dd>a character vector of one or more types</dd>
<dt>dim</dt>
<dd>logical; if set to TRUE, names will contain dimensions in brackets</dd>
<dt>opt</dt>
<dd>logical; if set to TRUE, names will contain options (e.g.,
has_output)</dd>
<dt>aux</dt>
<dd>logical; if set to TRUE, auxiliary names will be returned</dd></dl>

Arguments

Get variable names in a LibBi model — var_names

<dl>

<dt>x</dt>
<dd>a <code>bi_model</code> object</dd>


<dt>vars</dt>
<dd>a character vector of variable names; if given, only these
variables names will be considered</dd>


<dt>type</dt>
<dd>a character vector of one or more types</dd>


<dt>dim</dt>
<dd>logical; if set to TRUE, names will contain dimensions in brackets</dd>


<dt>opt</dt>
<dd>logical; if set to TRUE, names will contain options (e.g.,
has_output)</dd>


<dt>aux</dt>
<dd>logical; if set to TRUE, auxiliary names will be returned</dd>

</dl>

var_names: Get variable names in a LibBi model

Description

Usage

Value

Arguments