documentation_biom.rbiom

internal

A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.

Daniel P. Smith

rbiom

Read/Write, Analyze, and Visualize 'BIOM' Data

Alkek Center for Metagenomics and Microbiome Research 

documentation_biom.rbiom function

<dl><dt>biom</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>
<dt>.data</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>
<dt>x</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>
<dt>object</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>
<dt>data</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd></dl>

Arguments

documentation_biom.rbiom — documentation_biom.rbiom

<dl>

<dt>biom</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>


<dt>.data</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>


<dt>x</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>


<dt>object</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>


<dt>data</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>

</dl>

documentation_biom.rbiom: documentation_biom.rbiom

Description

Arguments