hmp50

Human Microbiome Project - demo dataset (n = 50)

datasets

A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.

Daniel P. Smith

rbiom

Read/Write, Analyze, and Visualize 'BIOM' Data

Alkek Center for Metagenomics and Microbiome Research 

hmp50 function

An rbiom object with 50 samples.
Includes metadata, taxonomy, phylogeny, and sequences.<dl>
<dt>Sex - </dt>
<dd>Male or Female</dd><dt>Body Site - </dt>
<dd>Anterior nares, Buccal mucosa, Mid vagina, Saliva, or Stool</dd><dt>Age - </dt>
<dd>21 - 40</dd><dt>BMI - </dt>
<dd>19 - 32</dd>
</dl>

Format

Human Microbiome Project - demo dataset (n = 50) — hmp50

An rbiom object with 50 samples.
Includes metadata, taxonomy, phylogeny, and sequences.<dl>
<dt>Sex - </dt>
<dd>Male or Female</dd>

<dt>Body Site - </dt>
<dd>Anterior nares, Buccal mucosa, Mid vagina, Saliva, or Stool</dd>

<dt>Age - </dt>
<dd>21 - 40</dd>

<dt>BMI - </dt>
<dd>19 - 32</dd>


</dl>

hmp50: Human Microbiome Project - demo dataset (n = 50)

Description

Usage

Arguments

Format