as.matrix.rbiom

Identical to running <code>as.matrix(biom$counts)</code>.

A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.

Daniel P. Smith

rbiom

Read/Write, Analyze, and Visualize 'BIOM' Data

Alkek Center for Metagenomics and Microbiome Research 

as.matrix.rbiom function

<dl><dt>x</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>
<dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

Convert an rbiom object to a simple count matrix. — as.matrix.rbiom

<dl>

<dt>x</dt>
<dd>An rbiom object, such as from <code>as_rbiom()</code>.</dd>


<dt>...</dt>
<dd>Not used.</dd>

</dl>

as.matrix.rbiom: Convert an rbiom object to a simple count matrix.

Description

Usage

Value

Arguments

See Also

Examples