documentation_taxa.4

internal

A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.

Daniel P. Smith

rbiom

Read/Write, Analyze, and Visualize 'BIOM' Data

Alkek Center for Metagenomics and Microbiome Research 

documentation_taxa.4 function

<dl><dt>taxa</dt>
<dd>Which taxa to display. An integer value will show the top n
most abundant taxa. A value 0 &lt;= n &lt; 1 will show any taxa with that
mean abundance or greater (e.g. <code>0.1</code> implies &gt;= 10%). A
character vector of taxa names will show only those named taxa.
Default: <code>4</code>.</dd></dl>

Arguments

documentation_taxa.4 — documentation_taxa.4

<dl>

<dt>taxa</dt>
<dd>Which taxa to display. An integer value will show the top n
most abundant taxa. A value 0 &lt;= n &lt; 1 will show any taxa with that
mean abundance or greater (e.g. <code>0.1</code> implies &gt;= 10%). A
character vector of taxa names will show only those named taxa.
Default: <code>4</code>.</dd>

</dl>

documentation_taxa.4: documentation_taxa.4

Description

Arguments