read_fasta

Parse a fasta file into a named character vector.

A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.

Daniel P. Smith

rbiom

Read/Write, Analyze, and Visualize 'BIOM' Data

Alkek Center for Metagenomics and Microbiome Research 

read_fasta function

<dl><dt>file</dt>
<dd>A file/URL with fasta-formatted sequences. Can optionally be
compressed with gzip, bzip2, xz, or lzma.</dd>
<dt>ids</dt>
<dd>Character vector of IDs to retrieve. The default, <code>NULL</code>,
will retrieve everything.</dd></dl>

Arguments

Parse a fasta file into a named character vector. — read_fasta

<dl>

<dt>file</dt>
<dd>A file/URL with fasta-formatted sequences. Can optionally be
compressed with gzip, bzip2, xz, or lzma.</dd>


<dt>ids</dt>
<dd>Character vector of IDs to retrieve. The default, <code>NULL</code>,
will retrieve everything.</dd>

</dl>

read_fasta: Parse a fasta file into a named character vector.

Description

Usage

Value

Arguments