cliffDelta: Cliff's delta

Description

Calculates Cliff's delta with confidence intervals by bootstrap

Usage

cliffDelta(
  formula = NULL,
  data = NULL,
  x = NULL,
  y = NULL,
  ci = FALSE,
  conf = 0.95,
  type = "perc",
  R = 1000,
  histogram = FALSE,
  reportIncomplete = FALSE,
  brute = FALSE,
  verbose = FALSE,
  digits = 3,
  ...
)

Value

A single statistic, Cliff's delta. Or a small data frame consisting of Cliff's delta, and the lower and upper confidence limits.

Arguments

formula: A formula indicating the response variable and the independent variable. e.g. y ~ group.
data: The data frame to use.
x: If no formula is given, the response variable for one group.
y: The response variable for the other group.
ci: If TRUE, returns confidence intervals by bootstrap. May be slow.
conf: The level for the confidence interval.
type: The type of confidence interval to use. Can be any of "norm", "basic", "perc", or "bca". Passed to boot.ci.
R: The number of replications to use for bootstrap.
histogram: If TRUE, produces a histogram of bootstrapped values.
reportIncomplete: If FALSE (the default), NA will be reported in cases where there are instances of the calculation of the statistic failing during the bootstrap procedure.
brute: If FALSE, the default, the statistic is based on the U statistic from the wilcox.test function. If TRUE, the function will compare values in the two samples directly.
verbose: If TRUE, reports the proportion of ties and the proportions of (Ya > Yb) and (Ya < Yb).
digits: The number of significant digits in the output.
...: Additional arguments passed to the wilcox.test function.

Author

Salvatore Mangiafico, mangiafico@njaes.rutgers.edu

Details

Cliff's delta is an effect size statistic appropriate in cases where a Wilcoxon-Mann-Whitney test might be used. It ranges from -1 to 1, with 0 indicating stochastic equality, and 1 indicating that the first group dominates the second. It is linearly related to Vargha and Delaney's A.

By default, the function calculates Cliff's delta from the "W" U statistic from the wilcox.test function. Specifically, VDA = U/(n1*n2); CD = (VDA-0.5)*2.

The input should include either formula and data; or x, and y. If there are more than two groups, only the first two groups are used.

Currently, the function makes no provisions for NA values in the data. It is recommended that NAs be removed beforehand.

When the data in the first group are greater than in the second group, Cliff's delta is positive. When the data in the second group are greater than in the first group, Cliff's delta is negative.

Be cautious with this interpretation, as R will alphabetize groups in the formula interface if the grouping variable is not already a factor.

When Cliff's delta is close to 1 or close to -1, or with small sample size, the confidence intervals determined by this method may not be reliable, or the procedure may fail.

References

http://rcompanion.org/handbook/F_04.html

Examples

Run this code

data(Catbus)
cliffDelta(Steps ~ Gender, data=Catbus)

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