reReg (version 1.4.7)

plotEvents: Produce Event Plots

Description

Plot the event plot for an Recur object. The usage of the function is similar to that of plot.Recur() but with more flexible options.

Usage

plotEvents(
  formula,
  data,
  result = c("increasing", "decreasing", "asis"),
  calendarTime = FALSE,
  control = list(),
  ...
)

Value

A ggplot object.

Arguments

formula

a formula object, with the response on the left of a "~" operator, and the predictors on the right. The response must be a recurrent event survival object as returned by function Recur().

data

an optional data frame in which to interpret the variables occurring in the "formula".

result

an optional character string specifying whether the event plot is sorted by the subjects' terminal time. The available options are

increasing

sort the terminal time from in ascending order (default). This places longer terminal times on top.

decreasing

sort the terminal time from in descending order. This places shorter terminal times on top.

none

present the event plots as is, without sorting by the terminal times.

calendarTime

an optional logical value indicating whether to plot in calendar time. When calendarTime = FALSE (default), the event plot will have patient time on the x-axis.

control

a list of control parameters. See Details.

...

graphical parameters to be passed to methods. These include xlab, ylab, main, and more. See Details.

Details

The argument control consists of options with argument defaults to a list with the following values:

xlab

customizable x-label, default value is "Time".

ylab

customizable y-label, default value is "Subject" for event plot and "Cumulative mean" for MCF plot.

main

customizable title, the default value is "Recurrent event plot" when mcf = FALSE and "Sample cumulative mean function plot" when mcf = TRUE.

terminal.name

customizable label for terminal event, the default value is "Terminal event".

recurrent.name

customizable legend title for recurrent event, the default value is "Recurrent events".

recurrent.types

customizable label for recurrent event type, the default value is NULL.

alpha

between 0 and 1, controls the transparency of points.

The xlab, ylab and main parameters can be specified outside of the control list.

See Also

Recur, plot.Recur

Examples

data(simDat)
plotEvents(Recur(t.start %to% t.stop, id, event, status) ~ 1, data = simDat,
           xlab = "Time in days", ylab = "Subjects arranged by terminal time")

## Separate plots by x1
plotEvents(Recur(t.start %to% t.stop, id, event, status) ~ x1, data = simDat)

## For multiple recurrent events
simDat$x3 <- ifelse(simDat$x2 < 0, "x2 < 0", "x2 > 0")
simDat$event <- simDat$event * sample(1:3, nrow(simDat), TRUE)
plotEvents(Recur(t.start %to% t.stop, id, event, status) ~ x1 + x3, data = simDat)