refGenome (version 1.7.7)

extractByGeneId: Extract subsets of refGenome by gene-ID.

Description

The function takes objects derived from refGenome or refJunctions and returns a subset in which gene_name matches the given values. The returned object is of the same class as the given object.

Usage

extractByGeneId(object,geneids,...)

Arguments

object

refGenome (or derived). Object from which subset is extracted.

geneids

Character. Vector with gene ID's.

...

(unused)

Value

Same class as object

Examples

# NOT RUN {
# + + + + + + + + + + + + + + + + + + #
# A) Extract from Genome
# + + + + + + + + + + + + + + + + + + #
ensfile<-system.file("extdata", 
                    "hs.ensembl.62.small.RData", package="refGenome")
ens<-loadGenome(ensfile)
ddx<-extractByGeneId(ens,"ENSG00000223972")
ddx
# + + + + + + + + + + + + + + + + + + #
# B) Extract from splice junctions
# + + + + + + + + + + + + + + + + + + #
junc<-getSpliceTable(ens)
ddx<-extractByGeneId(junc,"ENSG00000223972")
ddx
# }