ReconstructedLandmarkSet

<p>A ReconstructedLandmarkSet contains information about
  features located on <code>ReconstructedOutline</code>s. Each
  ReconstructedLandmarkSet contains a list of matrices, each of
  which has columns labelled <code>phi</code> (latitude) and
  <code>lambda</code> (longitude) describing the spherical coordinates
  of points on the ReconstructedOutline.</p>

Reconstructs retinae by morphing a flat surface with cuts
(a dissected flat-mount retina) onto a curvilinear surface (the
standard retinal shape). It can estimate the position of a point
on the intact adult retina to within 8 degrees of arc (3.6% of
nasotemporal axis). The coordinates in reconstructed retinae can
be transformed to visuotopic coordinates. For more details see
Sterratt, D. C., Lyngholm, D., Willshaw, D. J. and Thompson, I. D.
(2013) <doi:10.1371/journal.pcbi.1002921>.

David Sterratt

retistruct

Retinal Reconstruction Program

Daniel Lyngholm

Jan Okul

ReconstructedLandmarkSet function

Author

<p><code>retistruct::FeatureSetCommon</code> -&gt; <code>retistruct::ReconstructedFeatureSet</code> -&gt; <code>ReconstructedLandmarkSet</code></p>

Super classes


<div class="section" id="public-methods">
<h3>Public methods</h3><p></p><p><ul>
<li><p><a href="/link/ReconstructedLandmarkSet%24clone()?package=retistruct&version=0.8.0" data-mini-rdoc="retistruct::ReconstructedLandmarkSet$clone()"><code>ReconstructedLandmarkSet$clone()</code></a></p></li>
</ul></p><p></p></div><p><details><summary>Inherited methods</summary>
<ul>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getCol"><a href="/link/retistruct%3A%3AFeatureSetCommon%24getCol()?package=retistruct&version=0.8.0" data-mini-rdoc="retistruct::retistruct::FeatureSetCommon$getCol()"><code>retistruct::FeatureSetCommon$getCol()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getFeature"><a href="/link/retistruct%3A%3AFeatureSetCommon%24getFeature()?package=retistruct&version=0.8.0" data-mini-rdoc="retistruct::retistruct::FeatureSetCommon$getFeature()"><code>retistruct::FeatureSetCommon$getFeature()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getFeatures"><a href="/link/retistruct%3A%3AFeatureSetCommon%24getFeatures()?package=retistruct&version=0.8.0" data-mini-rdoc="retistruct::retistruct::FeatureSetCommon$getFeatures()"><code>retistruct::FeatureSetCommon$getFeatures()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getIDs"><a href="/link/retistruct%3A%3AFeatureSetCommon%24getIDs()?package=retistruct&version=0.8.0" data-mini-rdoc="retistruct::retistruct::FeatureSetCommon$getIDs()"><code>retistruct::FeatureSetCommon$getIDs()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getIndex"><a href="/link/retistruct%3A%3AFeatureSetCommon%24getIndex()?package=retistruct&version=0.8.0" data-mini-rdoc="retistruct::retistruct::FeatureSetCommon$getIndex()"><code>retistruct::FeatureSetCommon$getIndex()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="setID"><a href="/link/retistruct%3A%3AFeatureSetCommon%24setID()?package=retistruct&version=0.8.0" data-mini-rdoc="retistruct::retistruct::FeatureSetCommon$setID()"><code>retistruct::FeatureSetCommon$setID()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="ReconstructedFeatureSet" data-id="initialize"><a href="/link/retistruct%3A%3AReconstructedFeatureSet%24initialize()?package=retistruct&version=0.8.0" data-mini-rdoc="retistruct::retistruct::ReconstructedFeatureSet$initialize()"><code>retistruct::ReconstructedFeatureSet$initialize()</code></a></span></li>
</ul>
</details></p><p><hr>
<a id="method-ReconstructedLandmarkSet-clone"></a></p><div class="section" id="method-clone-">
<h3>Method <code>clone()</code></h3>
<p>The objects of this class are cloneable with this method.</p><div class="section" id="usage">
<h4>Usage</h4>
<p><div class="r"></div></p><pre><code>ReconstructedLandmarkSet$clone(deep = FALSE)</code></pre><p></p></div><p></p>
</div><p></p><p><div class="section" id="arguments">
<h4>Arguments</h4>
<p><div class="arguments"></div></p><dl>
<dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd></dl></div></p><p>
</p><p></p>
<p></p><p>
</p>

Methods

Class containing functions and data to map LandmarkSets to
ReconstructedOutlines — ReconstructedLandmarkSet


<div class='section' id='public-methods'>
<h3>Public methods</h3>

<ul>
<li><p><a href='#method-ReconstructedLandmarkSet-clone'><code>ReconstructedLandmarkSet$clone()</code></a></p></li>
</ul>

</div><p><details><summary>Inherited methods</summary>
<ul>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getCol"><a href='../../retistruct/html/FeatureSetCommon.html#method-FeatureSetCommon-getCol'><code>retistruct::FeatureSetCommon$getCol()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getFeature"><a href='../../retistruct/html/FeatureSetCommon.html#method-FeatureSetCommon-getFeature'><code>retistruct::FeatureSetCommon$getFeature()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getFeatures"><a href='../../retistruct/html/FeatureSetCommon.html#method-FeatureSetCommon-getFeatures'><code>retistruct::FeatureSetCommon$getFeatures()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getIDs"><a href='../../retistruct/html/FeatureSetCommon.html#method-FeatureSetCommon-getIDs'><code>retistruct::FeatureSetCommon$getIDs()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="getIndex"><a href='../../retistruct/html/FeatureSetCommon.html#method-FeatureSetCommon-getIndex'><code>retistruct::FeatureSetCommon$getIndex()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="FeatureSetCommon" data-id="setID"><a href='../../retistruct/html/FeatureSetCommon.html#method-FeatureSetCommon-setID'><code>retistruct::FeatureSetCommon$setID()</code></a></span></li>
<li><span class="pkg-link" data-pkg="retistruct" data-topic="ReconstructedFeatureSet" data-id="initialize"><a href='../../retistruct/html/ReconstructedFeatureSet.html#method-ReconstructedFeatureSet-initialize'><code>retistruct::ReconstructedFeatureSet$initialize()</code></a></span></li>
</ul>
</details>

<hr>
<a id="method-ReconstructedLandmarkSet-clone"></a></p><div class='section' id='method-clone-'>
<h3>Method <code>clone()</code></h3>
<p>The objects of this class are cloneable with this method.</p><div class='section' id='usage'>
<h4>Usage</h4>
<p><div class="r"></p><pre><code>ReconstructedLandmarkSet$clone(deep = FALSE)</code></pre><p></div></p>
</div>

<div class='section' id='arguments'>
<h4>Arguments</h4>
<p><div class="arguments"></p><dl>
<dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd>


</dl><p></div></p>
</div>

</div>


ReconstructedLandmarkSet: Class containing functions and data to map LandmarkSets to ReconstructedOutlines

Description

Arguments

Author

Super classes

Methods

Public methods

Method `clone()`

Usage

Arguments

Description

Arguments

Author

Super classes

Methods

Public methods

Method clone()

Usage

Arguments

Method `clone()`