retistruct.reconstruct

Reconstructs retinae by morphing a flat surface with cuts
(a dissected flat-mount retina) onto a curvilinear surface (the
standard retinal shape). It can estimate the position of a point
on the intact adult retina to within 8 degrees of arc (3.6% of
nasotemporal axis). The coordinates in reconstructed retinae can
be transformed to visuotopic coordinates. For more details see
Sterratt, D. C., Lyngholm, D., Willshaw, D. J. and Thompson, I. D.
(2013) <doi:10.1371/journal.pcbi.1002921>.

David Sterratt

retistruct

Retinal Reconstruction Program

Daniel Lyngholm

Jan Okul

retistruct.reconstruct function

<dl><dt>a</dt>
<dd><code>RetinalOutline</code> object with tear and
cut annotations</dd>
<dt>report</dt>
<dd>Function to report progress. Set to <code>FALSE</code> for
no reporting or to <code>NULL</code> to inherit from the argument given to <code>retistruct.read.dataset</code></dd>
<dt>plot.3d</dt>
<dd>If <code>TRUE</code> show progress in a 3D plot</dd>
<dt>dev.flat</dt>
<dd>The ID of the device to which to plot the flat
representation</dd>
<dt>dev.polar</dt>
<dd>The ID of the device to which to plot the polar
representation</dd>
<dt>shinyOutput</dt>
<dd>A Shiny output element used to render and display a
plot in the application.</dd>
<dt>debug</dt>
<dd>If <code>TRUE</code> print extra debugging output</dd>
<dt>...</dt>
<dd>Parameters to be passed to
<code>RetinalReconstructedOutline</code> constructor</dd></dl>

Arguments

Author

Reconstruct a retina — retistruct.reconstruct

<dl>

<dt>a</dt>
<dd><code>RetinalOutline</code> object with tear and
cut annotations</dd>


<dt>report</dt>
<dd>Function to report progress. Set to <code>FALSE</code> for
no reporting or to <code>NULL</code> to inherit from the argument given to <code>retistruct.read.dataset</code></dd>


<dt>plot.3d</dt>
<dd>If <code>TRUE</code> show progress in a 3D plot</dd>


<dt>dev.flat</dt>
<dd>The ID of the device to which to plot the flat
representation</dd>


<dt>dev.polar</dt>
<dd>The ID of the device to which to plot the polar
representation</dd>


<dt>shinyOutput</dt>
<dd>A Shiny output element used to render and display a
plot in the application.</dd>


<dt>debug</dt>
<dd>If <code>TRUE</code> print extra debugging output</dd>


<dt>...</dt>
<dd>Parameters to be passed to
<code>RetinalReconstructedOutline</code> constructor</dd>

</dl>

retistruct.reconstruct: Reconstruct a retina

Description

Usage

Value

Arguments

Author