coxStrata

coxStrata.cph

coxStrata.coxph

coxStrata.phreg

Define the strata in a dataset to match those of a stratified Cox model

Implementation of the following methods for event history analysis.
Risk regression models for survival endpoints also in the presence of competing
risks are fitted using binomial regression based on a time sequence of binary
event status variables. A formula interface for the Fine-Gray regression model
and an interface for the combination of cause-specific Cox regression models.
A toolbox for assessing and comparing performance of risk predictions (risk
markers and risk prediction models). Prediction performance is measured by the
Brier score and the area under the ROC curve for binary possibly time-dependent
outcome. Inverse probability of censoring weighting and pseudo values are used
to deal with right censored data. Lists of risk markers and lists of risk models
are assessed simultaneously. Cross-validation repeatedly splits the data, trains
the risk prediction models on one part of each split and then summarizes and
compares the performance across splits.

Thomas Alexander Gerds

riskRegression

Risk Regression Models and Prediction Scores for Survival
Analysis with Competing Risks

Johan Sebastian Ohlendorff

Paul Blanche

Rikke Mortensen

Marvin Wright

Nikolaj Tollenaar

John Muschelli

Ulla Brasch Mogensen

Brice Ozenne

coxStrata function

<dl><dt>object</dt>
<dd>The fitted Cox regression model object either
obtained with <code>coxph</code> (survival package), <code>cph</code>
(rms package), or <code>phreg</code> (mets package).</dd>
<dt>data</dt>
<dd>a <code>data.frame</code> or a <code>data.table</code></dd>
<dt>sterms</dt>
<dd>terms in the formula corresponding to the strata variables</dd>
<dt>strata.vars</dt>
<dd>the name of the variables used to define the strata</dd>
<dt>strata.levels</dt>
<dd>a named list containing for each variable used to form the strata all its possible levels</dd>
<dt>levels</dt>
<dd>the strata levels that have been used to fit the Cox model</dd></dl>

Arguments

Author

Define the strata for a new dataset — coxStrata

<dl>

<dt>object</dt>
<dd>The fitted Cox regression model object either
obtained with <code>coxph</code> (survival package), <code>cph</code>
(rms package), or <code>phreg</code> (mets package).</dd>


<dt>data</dt>
<dd>a <code>data.frame</code> or a <code>data.table</code></dd>


<dt>sterms</dt>
<dd>terms in the formula corresponding to the strata variables</dd>


<dt>strata.vars</dt>
<dd>the name of the variables used to define the strata</dd>


<dt>strata.levels</dt>
<dd>a named list containing for each variable used to form the strata all its possible levels</dd>


<dt>levels</dt>
<dd>the strata levels that have been used to fit the Cox model</dd>

</dl>

Define the strata for a new dataset

coxStrata: Define the strata for a new dataset

Description

Usage

Arguments

Author

Details