calcGeneVars

<code>liger</code> object. The input raw.data should be a list of hdf5 files.
Should call normalize and selectGenes before calling.

object

size of chunks in hdf5 file. (default 1000)

chunk

Print progress bar/messages (TRUE by default)

verbose

This function calculates the variance of gene expression values across cells for hdf5 files.

Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.

Chao Gao

rliger

Linked Inference of Genomic Experimental Relationships

calcGeneVars: Calculate variance of gene expression across cells in an online fashion

Description

Usage

Arguments

Value